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Apple Pie Cupcakes Recipe

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Warm & Familiar Apple Pie Cupcakes Recipe

There’s something irresistibly comforting about the scent of cinnamon-spiced apples baking in the oven—like a warm hug from your kitchen. These Apple Pie Cupcakes Recipe bring that classic apple pie feeling into a buttery, tender handheld treat. I love how each bite combines a soft, lightly sweet cake with pockets of velvety apple compote and a cinnamon-kissed cream cheese frosting that feels just right—not too sweet, never cloying.

As you bake these cupcakes, you’ll notice the warm fragrance filling your home, hinting at the cozy flavors waiting inside. They’re perfect for weekend lounging, holiday gatherings, or just treating yourself when you want something special without the fuss of slicing and sharing a whole pie.

Let’s walk through this Apple Pie Cupcakes Recipe together—I’ll share why each step matters and how easy swaps can help you make these your own. Ready to sprinkle a little magic (and cinnamon) in your kitchen?

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Standout Details

  • Comfort meets flavor: Cozy, rich, and balanced.
  • Beginner-friendly: Clear steps built for real kitchens.
  • Flexible: Easy swaps for ingredients you already have.
  • Meal-prep happy: Stores well without losing texture.

Ingredient Breakdown

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  • Tart Apples: Finely diced to soften into a luscious filling with a slight tang.
  • Brown Sugar: Adds caramel depth that brightens the apple compote.
  • Cornstarch: Thickens the apple filling into a velvety texture—don’t skip this.
  • Cinnamon: Warms both the filling and the cake with its fragrant spice.
  • Butter: Gives the cupcakes a tender crumb and rich mouthfeel.
  • Cake Flour: Creates a soft, delicate texture that’s perfect for cupcakes.
  • Baking Powder: Helps the cupcakes rise, keeping them light and fluffy.
  • Granulated Sugar & Eggs: Build structure and sweetness while creating a moist crumb.
  • Vanilla Extract: Balances the spices with a warm, sweet note.
  • Milk (Dairy or Non-Dairy): Adds moisture and helps the batter blend smoothly.
  • Cream Cheese Frosting: Combines tangy cream cheese with cinnamon and sweetness for that classic finish.

Before You Start

Prepping all your ingredients before mixing—also called mise en place—makes this Apple Pie Cupcakes Recipe a breeze. Preheat your oven to 350°F (175°C), and line your cupcake pan with parchment liners so everything’s ready when the batter is mixed. Having softened butter and room temperature eggs gives you a smoother batter that bakes evenly, so plan on letting those ingredients sit out for about 30 minutes if they’re cold from the fridge.

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Kitchen Setup

The tools that make Apple Pie Cupcakes Recipe easier, faster, and cleaner—plus optional add-ons if you love efficiency.

How to Make Apple Pie Cupcakes Recipe

  1. Make the Apple Filling: Combine diced tart apples, brown sugar, cornstarch, cinnamon, and water in a small pot. Cover and bring to a medium-high boil, then uncover and simmer, stirring often. You’ll want the apples tender and the liquid mostly evaporated into a thick, buttery compote. Keep an eye to avoid burning; a splash of water helps if it gets too dry. Once thick and fragrant, transfer to a bowl and cool completely. This step builds the juicy, warmly spiced filling that’s the heart of the cupcakes.
  2. Prep the Cupcake Pan: Preheat your oven to 350°F, then line a 12-hole muffin pan with parchment cupcake liners. This keeps the cupcakes from sticking, making cleanup simple and presentation neat.
  3. Whisk Dry Ingredients: In a bowl, stir together cake flour, baking powder, cinnamon, and salt. Sifting these into the batter later will help keep the cupcakes tender and even-textured.
  4. Cream Butter and Sugar: Using an electric hand mixer, beat the softened butter until creamy and smooth, then gradually beat in granulated sugar until fluffy and pale. This aeration is key for light cupcakes with a melt-in-your-mouth crumb.
  5. Add Eggs and Vanilla: Beat in eggs one at a time, ensuring each is fully incorporated before adding the next. Finish by mixing in vanilla extract for that inviting warmth in every bite.
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Cook Like a Pro

When folding in dry ingredients and milk, don’t overmix. Stir just until combined—that gentle touch keeps cupcakes tender and avoids a dense, chewy texture. If your batter looks a little lumpy, that’s perfect! Overmixing activates gluten, so handle the batter with care. Also, room-temperature ingredients help everything blend beautifully and bake evenly.

  1. Combine Wet and Dry Ingredients: Sift half of the dry mix into the wet batter and stir on low speed until barely combined. Add half the milk, mix gently, then repeat with the remaining dry ingredients and milk. You’ll notice a smooth, velvety batter—perfectly balanced for light cupcakes.
  2. Fill the Cupcake Liners: Spoon batter into each liner to about two-thirds full, allowing room for the cupcakes to rise without spilling over—this guarantees beautiful, rounded tops.
  3. Bake Until Golden: Bake for 20 minutes or until a toothpick comes out clean. You’ll see a soft golden crust and smell fragrant cinnamon floating through your kitchen. Let them rest in the pan for 5-10 minutes, then transfer to a wire rack to cool completely—cooling fully prevents the frosting from melting later.
  4. Prepare the Cream Cheese Frosting: Beat softened butter until creamy, then add cream cheese, powdered sugar, cinnamon, and vanilla extract. Mix on low until thick and smooth. This frosting adds the perfect tang and spice to balance the sweet apple filling.
  5. Assemble Your Cupcakes: Using a melon baller or small knife, scoop out the cupcake center about halfway down. Fill pockets with the cool apple compote, mounding slightly but leaving space at the edges. This layering creates a delicious surprise bite inside.
  6. Pipe the Frosting: Fit a piping bag with a small ribbon tip. Pipe two crisscross lines over the apple topping. Then switch to an open star tip to pipe a decorative border. This finishing touch makes each cupcake look as good as it tastes.

Flavor Variations for Apple Pie Cupcakes Recipe

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  • Maple Cinnamon: Swap the sugar in the filling for maple syrup to add a deep, woodsy sweetness.
  • Nutty Crunch: Fold walnuts or pecans into the batter for texture contrast and nuttiness.
  • Caramel Drizzle: After frosting, drizzle homemade or store-bought caramel on top for extra indulgence.
  • Spiced Up: Add a pinch of nutmeg and ground cloves to intensify the classic autumn spice profile.
  • Ginger Kick: Mix a teaspoon of fresh grated ginger into your apple filling for a lively zing.
  • Dairy-Free Version: Use a plant-based butter and cream cheese alternative that whips well without sacrificing flavor.

Storage, Freezer & Reheat Tips

  • Room Temperature: Store in an airtight container for up to 2 days; cupcakes remain moist, though frosting is best fresh.
  • Refrigeration: Keep frosted cupcakes in the fridge for 4-5 days; bring to room temp before serving to revive tender crumb and cream cheese smoothness.
  • Freezing: Freeze unfrosted cupcakes wrapped tightly in plastic wrap and foil for up to 3 months. Thaw overnight and frost as usual.
  • Reheat: Warm cupcakes gently in a microwave for 10 seconds for that freshly baked softness; avoid overheating or the frosting may separate.

Apple Pie Cupcakes Recipe FAQs

  • Can I use other types of apples? Absolutely! Firm apples like Honeycrisp or Granny Smith work best to hold shape without turning mushy.
  • Is it okay to substitute all-purpose flour? Yes, but your cupcakes may be slightly denser. For lighter texture, sift generously and consider reducing flour by a tablespoon.
  • Can I make this recipe vegan? You can swap butter for vegan butter and use a flax egg substitute. For frosting, use vegan cream cheese and powdered sugar alternatives.
  • How do I prevent the frosting from melting? Make sure cupcakes are fully cooled before frosting. Keep them refrigerated if you’re serving over time.
  • What’s the best way to scoop out cupcake centers? A small melon baller works wonderfully, but a paring knife or mini spoon can work if you don’t have one handy.
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Apple Pie Cupcakes Recipe

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4.7 from 147 reviews

Delight in these delicious Apple Pie Cupcakes featuring a perfectly spiced apple filling nestled inside moist cinnamon cupcake batter, topped with creamy cinnamon cream cheese frosting. A comforting treat that combines the flavors of classic apple pie with the ease of cupcakes, perfect for any occasion.

  • Author: Sophie
  • Prep Time: 1 hour
  • Cook Time: 35 minutes
  • Total Time: 1 hour 35 minutes
  • Yield: 12 cupcakes
  • Category: Dessert
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Ingredients

Apple Filling

  • 4 small tart apples, peeled, cored, and finely diced
  • 30 g brown sugar
  • 2 teaspoons cornstarch
  • 1 teaspoon ground cinnamon
  • 50 g water

Cupcakes

  • 185 g cake flour
  • 1 ½ teaspoons baking powder
  • 1 teaspoon ground cinnamon
  • ½ teaspoon salt
  • 115 g unsalted butter, softened to room temperature
  • 200 g granulated sugar
  • 3 large eggs, room temperature
  • 1 teaspoon vanilla extract
  • 150 g milk, dairy or non-dairy

Cream Cheese Frosting

  • 60 g unsalted butter, softened to room temperature
  • 125 g cream cheese, softened to room temperature
  • 75 g powdered sugar
  • 1 teaspoon ground cinnamon
  • 1 teaspoon vanilla extract

Instructions

  1. Prepare Apple Filling: In a small pot, combine diced apples, brown sugar, cornstarch, cinnamon, and water. Cover and bring to a boil over medium-high heat. Then uncover and cook, stirring frequently, until apples are tender and the liquid thickens into a compote. Add water if it becomes too dry or starts to burn. Transfer to a bowl and let cool completely.
  2. Preheat Oven and Prepare Pan: Preheat your oven to 350°F (175°C). Line a 12-hole muffin pan with cupcake liners and set aside.
  3. Mix Dry Ingredients: In a small bowl, whisk together cake flour, baking powder, cinnamon, and salt. Set aside for later use.
  4. Cream Butter and Sugar: In a large mixing bowl, beat softened butter with an electric mixer until creamy. Gradually add granulated sugar and continue beating until light and fluffy.
  5. Add Eggs and Vanilla: Beat in eggs one at a time, making sure each is incorporated fully. Finish by mixing in the vanilla extract.
  6. Combine Wet and Dry Mixtures: Using a fine mesh sieve, sift half of the dry ingredients into the wet mixture. Mix on low speed just until combined. Pour in half of the milk and mix gently. Repeat with remaining dry ingredients and milk, mixing just until smooth and combined without overmixing.
  7. Fill Cupcake Liners: Spoon the batter into the cupcake liners, filling each about two-thirds full.
  8. Bake Cupcakes: Bake in the preheated oven for approximately 20 minutes or until a toothpick inserted in the center comes out clean. Allow cupcakes to cool for 5-10 minutes in the pan, then transfer to a wire rack to cool completely.
  9. Make Cream Cheese Frosting: Beat softened butter in a small bowl until creamy. Add cream cheese, powdered sugar, cinnamon, and vanilla extract. Beat on low speed until smooth, thick, and creamy.
  10. Prepare Piping Bag: Transfer the frosting to a piping bag fitted with a small ribbon piping tip and set aside.
  11. Scoop Out Cupcake Centers: Using a melon baller or small knife, carefully scoop out the middle of each cooled cupcake about halfway down.
  12. Fill with Apple Compote: Fill the hollowed centers with the cooled apple compote. Spoon a bit more on top of the cupcake, flattening slightly but leaving edges uncovered.
  13. Pipe Frosting Decoratively: Using the ribbon piping tip, pipe two crisscross lines of frosting over the apple topping. Switch to an open star piping tip and pipe a border around the edge of the cupcake, finishing with a beautiful decorative touch.

Notes

  • If apples are too tart, adjust sweetness by adding a little more brown sugar to the filling.
  • Use parchment cupcake liners to prevent sticking and ease cleanup.
  • Ensure butter, eggs, and cream cheese are at room temperature for smooth mixing and better texture.
  • Do not overmix the batter to keep cupcakes tender and light.
  • For a dairy-free version, use non-dairy milk and cream cheese alternatives.
  • Apple compote can be made ahead and refrigerated for up to 3 days.
  • Use fresh cinnamon for the best flavor impact.

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